Frontiers in Bioengineering and Biotechnology
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Preprints posted in the last 30 days, ranked by how well they match Frontiers in Bioengineering and Biotechnology's content profile, based on 88 papers previously published here. The average preprint has a 0.10% match score for this journal, so anything above that is already an above-average fit.
Jakobsen, L. S.; Skals, S.; Christiansen, D.; Sorensen, J.; Pontonnier, C.; MADELEINE, P.
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Background Occupational exoskeletons are used to reduce physical workload and prevent work-related musculoskeletal disorders in physically demanding jobs. Although laboratory studies demonstrate reduced muscle load during simulated manual work tasks, evidence from long-term, real-world implementations remains very limited. The RELAX project aims to investigate the long-term effects of a passive back-support exoskeleton (BSE) during manual order-picking work in a Danish warehouse, focusing on health and socio-economic outcomes. Methods This 18-month controlled in-field intervention study compares outcomes at two warehouse departments: one where workers use a passive BSE and a control group where workers perform work tasks as usual. Approximately 90 full-time workers will be followed during the intervention period with questionnaires, interviews and company-registered performance indicators. Primary outcomes include perceived work intensity and musculoskeletal discomfort, while secondary outcomes include sickness absence, employee turnover, productivity and cost effectiveness. Furthermore, a process evaluation will be conducted based on questionnaires, focus-group interviews, and reported exoskeleton use. Quantitative effects will be analysed using difference-in-difference analysis with generalized linear mixed models to account for repeated measures over time. Employee turnover will be analysed using time-to-event analysis, and qualitative focus-group interviews will be analysed using reflexive thematic analysis to explore implementation processes and contextual factors. Cost-effectiveness and return on investment will be assessed by comparing the investment with potential savings in costs and resource use. Discussion By combining longitudinal quantitative outcomes with qualitative process evaluation, the study seeks to provide ecologically valid evidence on the effectiveness, feasibility and sustainability of occupational exoskeleton implementation. This approach will help clarify whether long-term exoskeleton use improves worker health without compromising productivity and may inform future workplace guidelines and large-scale adoption strategies.
Saffuri, E.; Jordan Dotan, L.; Solav, D.
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Various ankle-foot conditions (e.g., fractures, diabetic foot ulcers, and post-surgical recovery) require periods of complete non-weightbearing followed by gradually increasing partial loadings. However, existing assistive devices often provide inconsistent or uncomfortable offloading during gait. Additionally, prolonged proximal leg offloading can contribute to muscle atrophy, reduced bone density, and overuse of other body segments. We present a novel offloading ankle-foot orthosis (OLAFO) designed to overcome these limitations. The OLAFO features a patient-specific load-bearing shank brace, designed through a digital workflow and fabricated from a 3D-printed core reinforced with carbon-fiber composite lamination. Interlocking serrated side struts, adjustable in 2 mm increments, modulate load sharing between the shank and plantar surfaces. Furthermore, the OLAFO incorporates contact plates with a rocker profile informed by roll-over-shape measurements to support forward progression and gait symmetry. Proof-of-concept biomechanical verification in one able-bodied participant evaluated complete offloading, five partial-loading levels, and normal gait using a pressure walkway to compute vertical ground reaction forces and impulses. In complete offloading, the affected foot generated no contact pressures. Across partial-loading levels, the foot impulse increased from 14% to 53% of the total load and scaled linearly with strut height adjustments, supporting clinician-prescribed loading increments. Contralateral stance duration increased only modestly compared to commonly used assistive devices, indicating reduced compensatory loading on the intact limb. These findings demonstrate the proof-of-concept feasibility of the OLAFO, highlighting its potential for verifying full offloading and prescribing partial-loading targets during rehabilitation. Future research will evaluate performance across patient populations and clinical rehabilitation tasks.
Bergmann, M.; Belliard, N.; Meunier, P.; Roumezi, B.; Detournay, O.; Turhan, A. G.; Bennaceur Griscelli, A.
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BackgroundThe use of autologous or allogeneic cell therapies has now entered to the clinical practice in several fields of medicine, especially in oncology and hematology. From this regard, 2D-cell manufacturing is complex and costly and bioreactors have attracted major interest for efficient and cost-effective mass production of cells. Bioreactors have several advantages such as homogeneous repartition of nutrients and gas, control of all culture parameters and increased yield. However, the important shear stress generated by those bioreactors is an important disadvantage as it can affect cell survival or cell quality. This important shear stress is the result of the mixing method using either blades (used in stirred-tanked bioreactors) or gas bubbles (used in airlift bioreactors). Another downside of the use of bioreactors is the difficulty to scale-up. As the volume increases, the shear stress generated by blades radically increases leading to cell death and a decrease of cell quality. DescriptionIn this study, we describe a bioreactor developed using a different mixing method effectively reducing the shear stress and facilitating scale-up. This bladeless method uses an inclination of the bioreactor as well as rotation to mix fluids in a container. Here we described different steps that led to the adaptation of this bioreactor, initially developed for fragile microalgae culture, for mammalian cell culture amplification. The bioreactor was tested to amplify a natural killer (NK) cell line NK92 which is an IL-2 dependent cell line used in clinical trials for cancer therapy. We have tested the influence of 1-The number of cells seeded; 2-The influence of the rotation speed on cell growth and viability; 3-The influence of the bioreactor angle on the above parameters; 4-The duration of the culture. ResultsCells were initially seeded at 2.5.105 / ml in a volume of 380 ml. According to the rotation speed of 15, 30, 45 and 60 rpm, we have observed an increase of cell numbers at day 3 (3-fold), day 5 (7-fold) and day 7 (10-fold) compared to seeding, the best expansion being obtained at day 7 with a rotation speed of 45 rpm. The optimal angle of rotation was found to be 3 degree, with an optimal amplification at day 7 versus day 3 (p < 0.01). The viability was also found to be optimal in the latter condition. ConclusionsThese preliminary results demonstrate that NK92 cells could be amplified using this bioreactor. In the best tested condition, neither cell viability nor cell growth was impacted. These results strongly suggest the potential use of this device in future clinically applicable conditions.
Cornish, B. M.; Pizzolato, C.; Saxby, D. J.; Lyons, N. R.; Salchak, Y. A.; Worsey, M. T.; Lloyd, D. G.; Diamond, L. E.
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Tissue-level mechanical stimuli are primary drivers of tissue adaptation and can be optimised during conservative treatments to improve treatment outcomes for many highly prevalent musculoskeletal conditions. Current laboratory-based technologies limit our ability to connect conservative interventions such as exercise and movement modification with muscle, joint, and tissue-level mechanics, in natural environments. We introduce a physics-informed neural network (PINN) to estimate clinically relevant biomechanics from smart garments. By accounting for physiological dynamics of neural activation and muscle contraction, the PINN accurately predicted hip joint angles (RMSE <6 degrees), moments (RMSE 0.12 N*m/kg to 0.30 N*m/kg), and joint forces (RMSE 6 to 16%) from three inertial measurement units and four electromyographic sensors. We demonstrated that the trained PINN can be combined with a smart garment to estimate hip biomechanics, in real-time, during a gait retraining intervention aimed at modifying joint loading to treat hip osteoarthritis. The developed PINN and smart garment system may be adapted and generalised for personalised management or rehabilitation of a broad range of musculoskeletal diseases and injuries, in clinical, home, workplace, and sporting environments.
Conconi, M.; Modenese, L.; Barbieri, G. M.; Leardini, A.; Belvedere, C.; Sancisi, N.
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Background and ObjectiveThe foot-ankle complex is a highly articulated and mechanically constrained system, often simplified as a chain of few rigid segments, neglecting many bone-to-bone motions and raising questions about the accurate representation of interaction with ground. This study proposes a new reduced-order multibody formulation that captures intrinsic kinematic constraints of the foot through motion synergies. MethodsBones kinematic coupling, or motion synergies, were experimentally derived from weight-bearing CT scans using principal component analysis. These couplings were embedded in a synergy-based multibody kinematic optimization framework describing the foot-ankle with five degrees of freedom: ankle flexion; foot adduction, pronation, and arching; and toe flexion. Model accuracy was evaluated against bone-level experimental kinematics. The model was applied to gait data from healthy, flat, and diabetic feet and compared with a standard multi-segment foot model, assessing robustness by progressively reducing the number of skin markers. ResultsAverage errors were about 1{degrees} and 0.5 mm when using subject-specific synergies and below 7{degrees} and 4 mm when scaling the generic model, matching or exceeding the accuracy of existing models. Reliable reconstruction was obtained using only four foot markers. In clinical gait analysis, the model showed superior discrimination between populations and enabled assessment of transverse arch deformation, not accessible with conventional models. ConclusionThe proposed synergy-based model provides an accurate, low-complexity framework for reconstructing bone-level foot and ankle kinematics, substantially simplifying gait analysis while improving biomechanical interpretability. This framework supports future integration with dynamic models aimed at studying load transmission in the foot.
Gloersen, O.; Lundervold, A.; Werkhausen, A.
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Conventional diagonal stride skiing traditionally includes a glide phase, characterised by a period of relatively passive gliding on one ski. While the glide phase may take advantage of low ski-snow friction, it does not exhibit the same whole-cycle mechanical energy fluctuations seen in running or walking on foot. A new sub-technique, known as running style, substantially reduces the glide phase and may alter the role of elastic tissues, making the movement pattern more similar to uphill running on foot in its temporal organisation. We examined knee extensor and plantar flexor muscle-tendon behaviour in eight competitive skiers performing conventional diagonal and running techniques on a treadmill inclined at 10{degrees}. Using synchronised ultrasonography, 3D kinematics, ski forces and EMG, we quantified gastrocnemius medialis and vastus lateralis fascicle and muscle-tendon unit (MTU) dynamics in both the running (RUN) and conventional (CON) styles. Shorter glide and total cycle durations during RUN shifted MTU peak length and velocity earlier during the kick phase. Fascicles in both muscles operated at similar velocities across techniques, showing MTU-fascicle decoupling. Vastus lateralis fascicles shortened at higher absolute peak velocities than gastrocnemius in both conditions, while normalised velocities were similar. RUN increased preactivation and advanced EMG timing, while integrated EMG during the kick was lower compared to CON. These findings suggest that, despite large shifts in external mechanics between glide-based and more running-like skiing, elastic tissues may help stabilise fascicle behaviour and preserve a similar contractile strategy across muscles and techniques.
Thrikawala, S.; Naples, B.; Rosowski, E.
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One feature key to the versatility of zebrafish as an animal model for biomedical research is the breadth of genetic tools available, including for transgenesis. While the Tol2 transposase system remains the gold standard, its efficiency can be highly variable. Here, we explored the potential of a complementary transgenesis system, Cp36, a large serine recombinase identified from Clostridium perfringens previously found to efficiently integrate target cargo into the human genome without a preinstalled attB site. We generated Cp36-based plasmid constructs for zebrafish transgenesis and compared their performance to matched Tol2 plasmids across multiple experimental contexts, including transient expression, germline transmission, and multi-transgene expression. Cp36 integrates small [~]3.5kb cargo into the zebrafish genome and transmits to the next generation as efficiently as Tol2, but Cp36 performance declines substantially for larger [~]7.5kb constructs. Both Cp36 and Tol2 have comparable efficiency in transiently expressing a second construct regardless of the transposase/recombinase used to integrate the first construct, indicating compatibility with sequential transgenesis strategies. In summary, we demonstrate that Cp36 functions as a new alternative transgenesis method in zebrafish.
Behziz, B.; Nepo, M.; Mousavimotlagh, Y. S.; Tsao, T.-C.; Barzelay Wollman, A.
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PurposeTo characterize the frequency-dependent bioimpedance properties of major ocular tissues in intact ex vivo porcine eyes under simulated surgical conditions and evaluate tissue separability at discrete frequencies. MethodsBioimpedance spectra were acquired from sclera, corneal epithelium, iris, lens, vitreous, and retina in intact ex vivo porcine eyes using a two-electrode probe and a precision LCR meter over 5 kHz to 1 MHz. Measurements were obtained under balanced salt solution and ophthalmic viscosurgical device conditions. Probe-tissue contact was verified by microscope visualization and optical coherence tomography. Tissue separability at 5, 50, 100, and 900 kHz was evaluated using global and pairwise statistical comparisons, effect sizes, and ROC-based separability metrics. Robotic-stabilized and handheld measurements were also compared. ResultsOcular tissues demonstrated distinct, frequency-dependent impedance magnitude distributions. Across sampled frequencies, 60% to 80% of tissue pairs showed significant differences after multiplicity correction. Median pairwise effect sizes ranged from Cohens d = 0.48 at 5 kHz to 1.04 to 1.06 at 50 to 100 kHz. Median ROC-based separability was 0.91 at 5 kHz and 0.76 to 0.77 at 50 to 900 kHz. Robotic-stabilized measurements showed lower variance than handheld measurements, although tissue-specific impedance ranges and frequency-dependent trends were preserved across acquisition modes. ConclusionsMajor ocular tissues exhibit reproducible, frequency-dependent bioimpedance signatures in intact ex vivo eyes under simulated surgical preparation. These findings establish a physiologically relevant ocular impedance reference dataset and support bioimpedance as a complementary modality for tissue differentiation in ophthalmic microsurgery.
Banks, C. L.; Li, J.; Hall, B.; Stenum, J.; Roemmich, R. T.
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Gait asymmetry is a common manifestation of walking impairment among clinical populations. We recently developed a novel treadmill walking approach called dynamic treadmill walking that can provide asymmetric gait training by changing the treadmill speed between fast and slow speeds within a single stride. Here, we studied the energy expenditure associated with a variety of dynamic treadmill walking conditions. We hypothesized that the metabolic power required for dynamic treadmill walking in all conditions would approximate the metabolic power associated with conventional walking at the mean of the fast and slow speeds employed in the task. Eleven young adults without gait impairment walked on an instrumented treadmill and breathed into a metabolic measurement system. During dynamic treadmill walking, the treadmill fluctuated between 0.75m/s and 1.50m/s, each for 50% of an individuals stride time. We used a metronome to synchronize participants right heel-strikes with four different timing conditions. Net metabolic power during dynamic treadmill walking was significantly greater than normal walking at the mean speed of the task (1.125m/s) and generally lower than walking at the fast speed (1.5m/s). We did not observe any significant associations between net metabolic power and several measures of gait asymmetry during dynamic treadmill walking. These findings establish dynamic treadmill walking as a promising technique for improving gait symmetry in individuals who cannot tolerate fast treadmill walking, a common gait rehabilitation approach. Future work will assess the feasibility, metabolic demands, and clinical efficacy of using dynamic treadmill walking to improve gait symmetry in clinical populations. Key Points SummaryO_LIDynamic treadmill walking (i.e., walking with oscillating treadmill speeds) has previously been shown to drive gait asymmetries, but little is known about the energy expenditure required to complete the task. C_LIO_LIOur hypothesis was that dynamic treadmill walking would have similar metabolic power requirements to normal walking at a speed that is intermediate between the two dynamic treadmill walking speeds. C_LIO_LIWe found that dynamic treadmill walking actually requires metabolic power that is greater than the average of the two belt speeds, but less than that used for fast walking. C_LIO_LIDynamic treadmill walking is a promising and clinically translatable technique for rehabilitating populations with gait asymmetries that is not more energetically costly than fast treadmill walking, a common gait rehabilitation approach. C_LI
Christou-Smith, S.; Macfarlane, C.; Caulder, A.; Codner, G. F.; Dowding, S. N.; Mackenzie, M.; Desjardins, J.; Liu, K. J.; Isles, A. R.; Stewart, M. E.; Wells, S.; Teboul, L.
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The high efficiency of genome editing presents a challenge when modifying genes associated with viability, welfare, or fertility issues, as implementation of the technology frequently results in mosaic animals with bi-allelic mutations. Combining deactivated Cas9 (dCas9) with Cas9 has been proposed as a strategy to protect one of the two target alleles from editing. We piloted this strategy with 11 genes that are reported as homozygous lethal or associated with welfare issues. We showed that the viability of founders was significantly increased when using 80:20 or 90:10 dCas9:Cas9 ratios, whereas the 70:30 ratio did not yield an equivalent protective effect. The associated overall production rate of mutated founder per manipulated embryo was significantly higher for the 80:20 ratio. Concomitantly, an increased proportion of dCas9 was associated with a significant increase in retention of unedited target alleles but, importantly, did not hinder germline transmission. In addition, editing genes in a paralog cluster with a combination of dCas9 and Cas9 reduced unwanted off-target editing, illustrating a further potential applicability of this approach. This study defines the optimal ratio between dCas9 and Cas9 for strategies aimed at achieving mono-allelic mutations within mosaic founders and proposes a means to reduce the incidence of off-target effects in experiments with limited gRNA options.
Ozan, S.; Fradet, L.
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Recent advancements in wearable sensors and machine learning show promise for estimating lower-body joint torques outside of laboratory settings. Inertial Measurement Units combined with Convolutional Neural Networks have proven effective for this task. However, the impact of different input data types and formats remains underexplored. This study investigates how variations in input data influence the prediction of lower-body joint torques during walking. Results indicate that while dataset choice causes only minor differences in prediction performance, the overall quality of the dataset plays a more critical role than the specific input variables in achieving accurate torque predictions using wearable sensors.
Kawamura, A.; Vu, C. Q.; Shimizu, N.; Shibaguchi, T.; Masuda, K.; Arai, S.
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Understanding skeletal muscle metabolism involves real-time monitoring of key cellular parameters, such as calcium ions (Ca2+), adenosine triphosphate (ATP), cyclic adenosine monophosphate (cAMP), and intracellular temperature. Fluorescent protein (FP)-based biosensors are used for live-cell imaging of these signals with high spatiotemporal resolution. Differentiated myotubes are in vitro models used for physiological muscle metabolism research. However, efficient transfection of FP-based biosensors into these cells is challenging. Here, we developed an electroporation-based strategy for delivering recombinant protein biosensors into fully differentiated myotubes. Biosensors for Ca2+, ATP, cAMP, and temperature were recombinantly produced using Escherichia coli and introduced into myotubes using electroporation. Electroporation conditions were optimised to maximise delivery efficiency, preserve cell viability, and minimise cellular damage. We established a robust intracellular delivery system that effectively demonstrated Ca2+, ATP, and temperature dynamics. Furthermore, we achieved the successful co-delivery of two biosensors that enabled dual imaging of Ca2+ and cAMP in response to stimulation.
Trapote Fernandez, A.; Fernandez, A.; Mendez-Liter, J. A.; Prieto, A.; Barriuso, J.; Osorio, F. G.
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{beta}-galactosidases (BGs) are essential enzymes widely used in the food industry, particularly in the production of lactose-free products. Among them, the BG from Aspergillus oryzae is of industrial relevance due to its activity at acidic pH and moderate thermal tolerance. However, enhancing its catalytic performance remains a key challenge. Traditional enzyme engineering methods are time-consuming and resource-intensive, limiting their scalability. Recent advances in Artificial Intelligence (AI), particularly those based on Natural Language Processing, offer a promising alternative by enabling efficient exploration of protein sequence space and prediction of beneficial mutations. In this study, we introduce an ensemble-based, zero-shot Protein Language Model pipeline that reconciles predictions from six independent models (ESM2 and the five ESM1v variants) combined with a diversity-aware candidate selection strategy. Applied to the BG from A. oryzae, this approach identified beneficial mutations leading to novel enzyme variants with up to a four-fold increase in catalytic efficiency on oNPGal, a two-fold increase on lactose, and, independently, a T338I variant with markedly enhanced thermostability ({approx}80% residual activity after 24 h at 60 {degrees}C), all without requiring supervised fine-tuning on experimental fitness data. Our results demonstrate that consensus across an ensemble of PLMs can efficiently enrich beneficial substitutions in industrially relevant enzymes and substantially reduce the number of wet-lab candidates that need to be screened. Table of Contents graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=106 SRC="FIGDIR/small/726739v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@18084f7org.highwire.dtl.DTLVardef@99a102org.highwire.dtl.DTLVardef@19a64forg.highwire.dtl.DTLVardef@1f59cff_HPS_FORMAT_FIGEXP M_FIG C_FIG
Das, S.; Rakshe, M.; Sarkar, S.; Paul, R.; Marathe, S. D.; Abraham, N. M.; Gandhi, P. S.; Varma, H. M.
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Tissue phantoms that mimic microvasculature and perfusion are essential for modelling vascular function, guiding interventions, and calibrating imaging systems, which require faithful replication of vascular geometry and flow. Conventional fabrication strategies, including wire-based molding, lithographic micromachining, and additive manufacturing, offer useful capabilities but remain constrained by predefined designs, rectangular channel cross-sections, limited scalability, and high production costs. Reliance on predefined digital vascular models restricts design flexibility and limits the ability to capture the natural variability and complexity of real vascular systems. Here, we present a lithography-free, fractal-generating approach based on a modified Lifted Hele-Shaw Cell (LHSC) technique, in which vascular networks emerge spontaneously via interfacial fluid instabilities. Unlike pre-designed methods, these structures are governed by fluid properties and flow conditions, enabling adaptive, physiologically relevant geometries with smooth Gaussian cross-sections and natural diameter tapering. We demonstrate four phantom designs: a planar vascular tree, an anatomically guided cerebral network, a retinal vascular model, and a conformable curved substrate phantom. Validation using Laser Speckle Contrast Imaging confirms structural fidelity and physiologically relevant flow consistent with Murrays law. This platform uniquely integrates realistic vascular architecture with emergent, fractal driven formation, highlighting its potential as a reproducible and biologically relevant alternative to conventional vascular phantom fabrication. Furthermore, the availability of such realistic in vitro vascular models can reduce reliance on animal experiments and contribute towards more ethical and sustainable preclinical research.
FERNANDEZ SALOM, M. J.; CARABAJAL, M. P. A.; DI LULLO, D.; VILLA MICO, H. D.; FORMENTINI, E. A.; Cantero, M. D. R.; Cantiello, H. F.
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Cystic echinococcosis (CE), caused by the larval stage of Echinococcus granulosus, remains a significant public health and veterinary problem in endemic regions. Although chemotherapy and control programs exist, the development of complementary immunotherapeutic tools is increasingly needed. This study evaluated the generation and functional activity of hyperimmune serum (HIS) produced in three adult male castrated llamas (Lama glama) immunized with antigenic material derived from protoscoleces (PSCs) of the parasite. Sera collected after each of the first six immunizations were assessed by ELISA to quantify antigen-specific IgG responses, and their biological effects were tested in vitro using viable PSCs. Motility was measured using video-assisted paired-image scoring across serial serum dilutions (1:2-1:2048), and the methylene blue exclusion assay was used to assess viability. Hyperimmune serum produced a clear, reproducible, dose-dependent inhibition of PSC motility and viability. Higher titers of early inoculations reduced motility by 70-85%, while sera from the fifth and sixth inoculations achieved complete suppression. Naive serum and PBS controls showed no inhibitory effect. ELISA titers strongly correlated with biological activity, indicating that higher humoral responses predicted functional inhibition. These findings demonstrate the feasibility of generating potent anti-Echinococcus granulosus polyclonal antibodies in camelids and support their potential application in passive immunization strategies. The study establishes a foundation for future development of llama-derived immunobiological reagents, including nanobody-based tools, for the control of cystic echinococcosis.
Ding, L.; Zhang, J.; Alam El Din, D.-M.; Morales Pantoja, I. E.; Hartung, T.; Smirnova, L.
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Cryopreservation offers an option for long-term storage and global distribution of complex in vitro models, yet protocols for multicellular microphysiolgocial systems (MPS) such as brain organoids/spheroids remain limited. Here, we systematically compared three commercially available cryopreservation (mFreSR, CryoStorCS10, and 3dGRO) and two freezing time points, and established a robust workflow for freezing and recovering brain organoids. After defrosting, we assessed morphology and metabolic activity. We also evaluated electrophysiology, calcium transients, and neurite outgrowth. In addition, we measured astrocyte migration, apoptosis, mitochondrial integrity, microglia survival, and neural marker expression. We found that organoids require a 4-week recovery period to regain structural and functional stability. Although organoids frozen at week 6 showed higher metabolic activity after recovery, organoids cryopreserved at week 2 had clearly better functional outcomes. They exhibited stronger spontaneous network firing and maintained calcium transients. Finally, incorporated microglia-like cells survived the freezing and displayed comparable morphology to unfrozen controls. Across the endpoints measured here, 3dGRO showed the most favorable overall performance; formal ranking across media awaits harmonized normalization, single-organoid electrophysiology, and prespecified QC thresholds. Together, these results define a practical and reproducible cryopreservation strategy that preserves key physiological features of brain organoids and supports the establishment of ready-to-use organoid banks. The ability to reliably store and distribute complex brain-like tissues represents an essential step toward global standardization, scalable experimentation, and wider adoption of human-relevant microphysiological systems. Together, these results demonstrate recovery of key physiological features in the subset of organoids that remain viable after thaw and support the feasibility of brain organoid banking.
Herbowski, L.
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Understanding intracranial pressure (ICP) dynamics is essential for interpreting clinical infusion tests used in the diagnosis of cerebrospinal fluid circulation disorders. However, the complex coupling between vascular pulsations, cerebrospinal fluid flow, and intracranial compliance makes quantitative interpretation of these tests challenging. Here, I present a patient specific simulation framework based on an extended electrical analog model that reproduces intracranial pressure dynamics observed during clinical infusion tests. The model integrates physiological inputs including arterial blood pressure, heart rate, respiratory rhythm, and resistance to cerebrospinal fluid outflow derived from clinical data. Built upon the classical Ursino framework, the model incorporates several modifications enabling realistic representation of physiological pulsations and infusion test conditions. The resulting system functions as a hybrid electrical-numerical simulation model representing a simplified digital electrical twin of intracranial hydrodynamics. The model was validated using data from 21 clinical infusion tests performed in patients with suspected normal pressure hydrocephalus. Simulated intracranial pressure recordings were compared with clinical measurements using regression and residual analysis. The simulations demonstrated strong agreement with measured data, with a mean correlation coefficient of r = 0.95 (95% CI 0.94 - 0.96), mean residual values within -1.71 to +1.68 mmHg, and a mean root mean square error (RMSE) of 2.07 mmHg. These results demonstrate that the proposed model accurately reproduces the dynamic behavior of intracranial pressure observed during clinical infusion tests. The framework provides a physiologically grounded computational tool for studying patient specific intracranial dynamics and may support improved interpretation of infusion test results in clinical practice.
Vemparala, G.; Kumaraguru, T.; Anupoju, G. R.
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Fermentation of C1 gases is an emerging technology where waste gases are bio converted into value-added products. This study navigates the gas fermentation potential of Gordonia rubripertincta to produce carotenoids. The crucial carbon monoxide dehydrogenase (CODH) enzyme, necessary for gas uptake by the microbe, was found to be present in G. rubripertincta through blastp on NCBI website. The organism was then used for gas fermentation experiments in a continuous stirred tank reactor (CSTR) in different modes of reactor operation resulting in the production of about 500 mg pigment/g WCW (wet cell weight). Two important reactor parameters, molybdenum content and pH, were optimized for enhanced carotenoid production. Overall, G. rubripertincta was observed to be an efficient candidate organism for C1 gas fermentation. KEY HIGHLIGHTSO_LIGordonia rubripertincta synthesises aerobic carbon monoxide dehydrogenase enzyme. C_LIO_LIIt is a potential gas fermenting microbe that gives carotenoids as product. C_LIO_LIThe gas uptake efficiency of the microbe is more in fed-batch discontinued mode. C_LIO_LIIn FB-D, the resultant carotenoids are 500+9 mg/g wet cell weight (WCW). C_LIO_LIMo/pH of 20 mg/7.0 resulted in highest carotenoids, i.e., 134+41 mg/g WCW. C_LI GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=87 SRC="FIGDIR/small/722808v1_ufig1.gif" ALT="Figure 1"> View larger version (28K): org.highwire.dtl.DTLVardef@8b1185org.highwire.dtl.DTLVardef@2b6f90org.highwire.dtl.DTLVardef@1a9697dorg.highwire.dtl.DTLVardef@14c9dc8_HPS_FORMAT_FIGEXP M_FIG C_FIG
Radke, M.; Calo, C. J.; Hind, L. E.
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Tissue engineered constructs are increasingly used for both modeling organs and disease in vitro as well as for therapeutic intervention. In addition to collagen, these constructs commonly include native extracellular matrix proteins (ECM), such as fibronectin and laminin. Given the critical role of inflammatory pathways in disease and in response to implanted materials, it is important to understand the role these proteins play in regulating the inflammatory environment. Fibronectin and laminin influence neutrophil function and endothelial activation in 2D, but their regulation of the inflammatory environment in 3D engineered constructs is not clear. For this study, we used an inflammation-on-a-chip device that includes a model blood vessel surrounded by a collagen I hydrogel with fibronectin and/or laminin. We investigated the additive effects of both proteins and a range of concentrations for each protein to determine concentration dependence. Both fibronectin and laminin have concertation dependent effects on neutrophils and the endothelium. High concentrations (50 {micro}g/mL) of fibronectin reduced neutrophil migration, while 20 {micro}g/mL laminin reduced neutrophil extravasation and migration, potentially due to lower ICAM-1 expression by the endothelium. Interestingly, 50 {micro}g/mL of laminin significantly disrupted endothelial vessel formation and reduced ICAM-1 and VE-cadherin expression, likely due to significant changes in the collagen architecture. The inclusion of fibronectin and laminin, even at physiological levels, results in significant effects on neutrophil behavior, endothelial vessel formation, and collagen architecture. These proteins impact the inflammatory environment and thus need to be considered when modeling diseases and designing therapeutics, especially when neutrophils or an endothelium are involved. Translational Impact StatementThis work uses an inflammation-on-a-chip device to study how fibronectin and laminin impact neutrophil behavior and vascular inflammation as these proteins are commonly used in engineered constructs. We found that fibronectin impairs neutrophil migration, while laminin decreases neutrophil extravasation and migration and at higher concentrations also prevents endothelial vessel formation. Therefore, researchers should be aware that these proteins will alter the inflammatory environment when including them in engineered constructs.
Messmer, M.; de Carpentier, F.; Lam, E.; Hong, M.; Wakao, S.; Schroda, M.; Niyogi, K. K.
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Chlamydomonas reinhardtii is a model green alga extensively used to study photosynthesis and cilia using molecular biology and genetics. Electroporation is a very common technique to transform DNA into the nuclear genome, which is essential to generate mutant collections and express transgenes. Here, we describe a simple, fast, and efficient protocol to transform strains with an intact cell wall. It achieves a good transformation efficiency without cell wall digestion or use of commercial kits and is compatible with the widely available Gene Pulser electroporation system. Key featuresO_LIHigh transformation efficiency of Chlamydomonas reinhardtii strains with an intact cell wall. C_LIO_LIFaster than currently available electroporation protocols. C_LI